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Description

ATAC-seq digital genomic footprinting Footprinting analysis to determine TF occupancy was performed on sample-merged bam files (samtools merge 93 ) and sample-merged narrowpeak output from MACS2 using the Wellington algorithm from the pyDNase package v0.3.0 112

Alcohol abstinence rescues hepatic steatosis and liver injury via improving metabolic reprogramming in chronic alcohol-fed mice

Subsequently, three methods, were employed to select metabolites: the multiple change method (FC value), the t test method ( p value, and FDR value), and the partial least squares discriminant analysis method (VIP value)